PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013595350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 335aa    MW: 38281.5 Da    PI: 6.3638
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013595350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH444e-14131177354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  XP_013595350.1 131 KSHSEAERRRRERINTHLAKLRSILPNT-----TKTDKASLLAEVIQHMKEL 177
                     79*************************9.....8****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85128177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11131177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-14132189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-14132187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.2E-13134183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.56E-4141180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MYAMKEEDCL QTFHNLQDYQ DQFLLHLHPQ NHPWSSLPSF DPTHFPSNPT RYPDPVHYFN  60
KRASSSSSFD YTDGFVSPPM DNHHHQNHLR ILSEALGPIM RRGSSFGFDG EVMGKMSAQE  120
VMDAKALAAS KSHSEAERRR RERINTHLAK LRSILPNTTK TDKASLLAEV IQHMKELKRQ  180
TSLVTETCQV PTESDDLTVD STYNDEEGNL VIRASFCCGD RTDLIHDVIN ALKSLHLRTL  240
KAEIATVGGR VKNVLFLSRD DHEDDGFEYR NDAVEHDDEE KRYNRVSSIE EALKAVIEKC  300
VNNNDENNDN NNLEKSSSGS IKRQRTTKMA NRCYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1136141ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0588400.0AY058840.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0790330.0AY079033.1 Arabidopsis thaliana AT3g25710/K13N2_1 mRNA, complete cds.
GenBankAY0863830.0AY086383.1 Arabidopsis thaliana clone 247881 mRNA, complete sequence.
GenBankDQ2056790.0DQ205679.1 Arabidopsis thaliana ABA-regulated protein AIG1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595350.10.0PREDICTED: transcription factor AIG1
SwissprotQ9LS080.0BH032_ARATH; Transcription factor AIG1
TrEMBLA0A0D3DAU00.0A0A0D3DAU0_BRAOL; Uncharacterized protein
STRINGBra026510.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139491725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.10.0basic helix-loop-helix 32